> For the complete documentation index, see [llms.txt](https://www.parapathology.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://www.parapathology.com/computational-digital-and-mathematical-pathology/analysis.md).

# Analysis

{% embed url="<https://www.youtube.com/watch?v=3CJpD8z-CNw&ab_channel=PathAI>" %}

## Analysis

**ImmunoRatio**

<http://153.1.200.58:8080/immunoratio/>

<http://imtmicroscope.uta.fi/immunoratio/>

ImmunoRatio: a publicly available web application for quantitative image analysis of estrogen receptor (ER), progesterone receptor (PR), and Ki-67. [PMID: 20663194](https://www.ncbi.nlm.nih.gov/pubmed/20663194)

**ImmunoMembrane**

<http://153.1.200.58:8080/immunomembrane/>

ImmunoMembrane: a publicly available web application for digital image analysis of HER2 immunohistochemistry. [PMID: 22296215](https://www.ncbi.nlm.nih.gov/pubmed/22296215)

Quantifying Stained Liver Tissue

<https://imagej.nih.gov/ij/docs/examples/stained-sections/index.html>

<https://www.researchgate.net/post/Can_ImageJ_software_be_used_to_calculate_collagen_volume_fraction_from_Massons-Trichrome_stained_slide_images>

<https://www.scientistsolutions.com/forum/cytology-histology-and-ihc-digital-atlas/how-can-use-imagej-software-collagen-deposition>

Quantification of myocardial fibrosis by digital image analysis and interactive stereology

<https://diagnosticpathology.biomedcentral.com/articles/10.1186/1746-1596-9-114>

**Quantifications of Western Blots with ImageJ**

Comparison of collagen content in skin wounds evaluated by biochemical assay and by computeraided histomorphometric analysis

Virtual Double Staining for Automated Quantification in Immunohistochemistry

<https://www.youtube.com/watch?v=_BLOizOLiMo>

## Analysis

**ImmunoRatio**

<http://153.1.200.58:8080/immunoratio/>

<http://imtmicroscope.uta.fi/immunoratio/>

ImmunoRatio: a publicly available web application for quantitative image analysis of estrogen receptor (ER), progesterone receptor (PR), and Ki-67. [PMID: 20663194](https://www.ncbi.nlm.nih.gov/pubmed/20663194)

**ImmunoMembrane**

<http://153.1.200.58:8080/immunomembrane/>

ImmunoMembrane: a publicly available web application for digital image analysis of HER2 immunohistochemistry. [PMID: 22296215](https://www.ncbi.nlm.nih.gov/pubmed/22296215)

Quantifying Stained Liver Tissue

<https://imagej.nih.gov/ij/docs/examples/stained-sections/index.html>

<https://www.researchgate.net/post/Can_ImageJ_software_be_used_to_calculate_collagen_volume_fraction_from_Massons-Trichrome_stained_slide_images>

<https://www.scientistsolutions.com/forum/cytology-histology-and-ihc-digital-atlas/how-can-use-imagej-software-collagen-deposition>

Quantification of myocardial fibrosis by digital image analysis and interactive stereology

<https://diagnosticpathology.biomedcentral.com/articles/10.1186/1746-1596-9-114>

**Quantifications of Western Blots with ImageJ**

Comparison of collagen content in skin wounds evaluated by biochemical assay and by computeraided histomorphometric analysis

Virtual Double Staining for Automated Quantification in Immunohistochemistry

<https://www.youtube.com/watch?v=_BLOizOLiMo>

**ImmunoRatio**

<http://153.1.200.58:8080/immunoratio/>

<http://imtmicroscope.uta.fi/immunoratio/>

ImmunoRatio: a publicly available web application for quantitative image analysis of estrogen receptor (ER), progesterone receptor (PR), and Ki-67. [PMID: 20663194](https://www.ncbi.nlm.nih.gov/pubmed/20663194)

**ImmunoMembrane**

<http://153.1.200.58:8080/immunomembrane/>

ImmunoMembrane: a publicly available web application for digital image analysis of HER2 immunohistochemistry. [PMID: 22296215](https://www.ncbi.nlm.nih.gov/pubmed/22296215)

Quantifying Stained Liver Tissue

<https://imagej.nih.gov/ij/docs/examples/stained-sections/index.html>

<https://www.researchgate.net/post/Can_ImageJ_software_be_used_to_calculate_collagen_volume_fraction_from_Massons-Trichrome_stained_slide_images>

<https://www.scientistsolutions.com/forum/cytology-histology-and-ihc-digital-atlas/how-can-use-imagej-software-collagen-deposition>

Quantification of myocardial fibrosis by digital image analysis and interactive stereology

<https://diagnosticpathology.biomedcentral.com/articles/10.1186/1746-1596-9-114>

**Quantifications of Western Blots with ImageJ**

Comparison of collagen content in skin wounds evaluated by biochemical assay and by computeraided histomorphometric analysis

Virtual Double Staining for Automated Quantification in Immunohistochemistry

<https://www.youtube.com/watch?v=_BLOizOLiMo>

**ImmunoRatio**

<http://153.1.200.58:8080/immunoratio/>

<http://imtmicroscope.uta.fi/immunoratio/>

ImmunoRatio: a publicly available web application for quantitative image analysis of estrogen receptor (ER), progesterone receptor (PR), and Ki-67. [PMID: 20663194](https://www.ncbi.nlm.nih.gov/pubmed/20663194)

**ImmunoMembrane**

<http://153.1.200.58:8080/immunomembrane/>

ImmunoMembrane: a publicly available web application for digital image analysis of HER2 immunohistochemistry. [PMID: 22296215](https://www.ncbi.nlm.nih.gov/pubmed/22296215)

Quantifying Stained Liver Tissue

<https://imagej.nih.gov/ij/docs/examples/stained-sections/index.html>

<https://www.researchgate.net/post/Can_ImageJ_software_be_used_to_calculate_collagen_volume_fraction_from_Massons-Trichrome_stained_slide_images>

<https://www.scientistsolutions.com/forum/cytology-histology-and-ihc-digital-atlas/how-can-use-imagej-software-collagen-deposition>

Quantification of myocardial fibrosis by digital image analysis and interactive stereology

<https://diagnosticpathology.biomedcentral.com/articles/10.1186/1746-1596-9-114>

**Quantifications of Western Blots with ImageJ**

Comparison of collagen content in skin wounds evaluated by biochemical assay and by computeraided histomorphometric analysis

Virtual Double Staining for Automated Quantification in Immunohistochemistry

<https://www.youtube.com/watch?v=_BLOizOLiMo>

## Analysis

**ImmunoRatio**

<http://153.1.200.58:8080/immunoratio/>

<http://imtmicroscope.uta.fi/immunoratio/>

ImmunoRatio: a publicly available web application for quantitative image analysis of estrogen receptor (ER), progesterone receptor (PR), and Ki-67. [PMID: 20663194](https://www.ncbi.nlm.nih.gov/pubmed/20663194)

**ImmunoMembrane**

<http://153.1.200.58:8080/immunomembrane/>

ImmunoMembrane: a publicly available web application for digital image analysis of HER2 immunohistochemistry. [PMID: 22296215](https://www.ncbi.nlm.nih.gov/pubmed/22296215)

Quantifying Stained Liver Tissue

<https://imagej.nih.gov/ij/docs/examples/stained-sections/index.html>

<https://www.researchgate.net/post/Can_ImageJ_software_be_used_to_calculate_collagen_volume_fraction_from_Massons-Trichrome_stained_slide_images>

<https://www.scientistsolutions.com/forum/cytology-histology-and-ihc-digital-atlas/how-can-use-imagej-software-collagen-deposition>

Quantification of myocardial fibrosis by digital image analysis and interactive stereology

<https://diagnosticpathology.biomedcentral.com/articles/10.1186/1746-1596-9-114>

**Quantifications of Western Blots with ImageJ**

Comparison of collagen content in skin wounds evaluated by biochemical assay and by computeraided histomorphometric analysis

Virtual Double Staining for Automated Quantification in Immunohistochemistry

<https://www.youtube.com/watch?v=_BLOizOLiMo>