Pathology and Social Media
Pathology Tweets
Pathophysiology
Carcinogenesis, Hallmarks of Cancer
Pathology and Social Media
Pathology Tweets

Git GitHub

Git GitHub

  • Publish blog posts from R + knitr to WordPress

https://yihui.name/knitr/demo/wordpress/

https://github.com/yihui/travis-blogdown

  • add this to book.json

{
"plugins": ["youtube", "youtubex", "component", "autosize-iframe"]
}
  • Gitbook plugin component

https://plugins.gitbook.com/plugin/component

{
"plugins": ["component"]
}
{% component %}
{% endcomponent %}
  • YouTube

{% youtube %}CR-7blJkNaI{% endyoutube %}
  • add this to book.json

{
"plugins": ["youtube", "youtubex", "component", "autosize-iframe"]
}
  • Gitbook plugin component

https://plugins.gitbook.com/plugin/component

{
"plugins": ["component"]
}
{% component %}
{% endcomponent %}
  • YouTube

{% youtube %}CR-7blJkNaI{% endyoutube %}

GitBook Plugins

  • add this to book.json

{
"plugins": ["youtube", "youtubex", "component", "autosize-iframe"]
}
  • Gitbook plugin component

https://plugins.gitbook.com/plugin/component

{
"plugins": ["component"]
}
{% component %}
{% endcomponent %}
  • YouTube

{% youtube %}CR-7blJkNaI{% endyoutube %}

https://www.softwarelab.it/2018/10/12/adding-an-existing-project-to-github-using-the-command-line/

  • Create a new repository on GitHub. You can also add a gitignore file, a readme and a > licence if you want

  • Open Git Bash

  • Change the current working directory to your local project.

  • Initialize the local directory as a Git repository.

git init
  • Add the files in your new local repository. This stages them for the first commit.

git add .
  • Commit the files that you’ve staged in your local repository.

git commit -m "initial commit"
  • Copy the https url of your newly created repo

  • In the Command prompt, add the URL for the remote repository where your local repository > will be pushed.

git remote add origin 'remote_repository_URL'
git remote -v
  • Push the changes in your local repository to GitHub.

git push -f origin master

clone a branch

https://github.com/jamovi/jamovi/tree/current-dev

git clone --single-branch --branch current-dev https://github.com/jamovi/jamovi.git

Keeping a fork up to date

https://gist.github.com/sbalci/9959350f59eda7ca24bd77fe2d21323f

  1. Clone your fork:

git clone [email protected]:YOUR-USERNAME/YOUR-FORKED-REPO.git
  1. Add remote from original repository in your forked repository:

cd into/cloned/fork-repo
git remote add upstream git://github.com/ORIGINAL-DEV-USERNAME/REPO-YOU-FORKED-FROM.git
git fetch upstream
  1. Updating your fork from original repo to keep up with their changes:

git pull upstream master

Deleting the .git folder may cause problems in your git repository. If you want to delete all your commit history but keep the code in its current state, it is very safe to do it as in the following:

  1. Checkout

    git checkout --orphan latest_branch

  2. Add all the files

    git add -A

  3. Commit the changes

    git commit -am "commit message"

  4. Delete the branch

    git branch -D main

  5. Rename the current branch to main

    git branch -m main

  6. Finally, force update your repository

    git push -f origin main